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    How to clean a very large H2 Database

    Mango Automation general Discussion
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    • E
      etantonio
      last edited by

      Hy,
      I've a very big H2 database, about 4GB, nw finally I can delete data older than 2 month, I tried to purge from purge settings
      0_1537903348085_Purgesettings.PNG

      no result after "Purge now using purge settings".
      So I delete data older than 2 month on each datasource, and this seems to be ok but db size is not changed after such deletes.
      Where Is my error?
      Thanks,
      Antonio

      1 Reply Last reply Reply Quote 0
      • phildunlapP
        phildunlap
        last edited by

        Hi Antonio,

        Purging point values will only clean up tables in the H2 if you are not using NoSQL. But, merely deleting from tables in H2 is insufficient to get it to shrink itself. There is some amount of 'compaction' that it does when Mango shuts down, but in my experience the real way to shrink your H2 database is to,

        1. Use the SQL backup section of the system settings to create a core-database-H2-date.zip file in your Mango/backup (or as configured) directory.
        2. Stop Mango
        3. Move your existing Mango/databases/mah2.h2.db file elsewhere for safe keeping
        4. Start Mango
        5. Use the SQL backup section of the system settings section to restore the backup from part 1

        You may need to restart Mango again after that if you notice your data sources are not polling.

        I would definitely expect your database to shrink significantly by going through this backup / restore process.

        1 Reply Last reply Reply Quote 0
        • E
          etantonio
          last edited by

          at the moment there are sql errors during database startup after restoring, and in any case the size is always more than 2.5GByte for 2 mounths data.
          I've to delete audit? How?
          We can't start with a new empty database

          1 Reply Last reply Reply Quote 0
          • phildunlapP
            phildunlap
            last edited by

            You should share the SQL errors if you are going to refer to them. It is not supported to restore an older Mango database version into a newer Mango. To do that you should restore the database first at the command line, then start Mango, which will work even if the backup is from an older version. I have provided instructions on doing that here: https://forum.infiniteautomation.com/topic/2748/how-to-restore-a-database-backup

            I've to delete audit? How?

            Where is that coming from? You can use the Mango/bin/h2-web-console.sh or .bat script to get a direct connection to the database if you need to change anything there directly, but you shouldn't need to.

            We can't start with a new empty database

            As in, "It is not acceptable" rather than unable to, right? Were you using the NoSQL module? Do you have a Mango/databases/mangoTSDB directory?

            1 Reply Last reply Reply Quote 0
            • E
              etantonio
              last edited by etantonio

              After restore of Database the size is still 2.5GByte starting from 3GByte,
              in any case after restore I choose to restart Mango, this is the error:

              0_1538418882904_ErBOtto.PNG

              Seems that Events table is no more available.
              There's no way to restore this database, this is fourth attempt failed.

              1 Reply Last reply Reply Quote 0
              • phildunlapP
                phildunlap
                last edited by

                Hmm. That's definitely why I always say,

                Move your existing Mango/databases/mah2.h2.db file elsewhere for safe keeping

                You should be able to start up on that database. If your events table is missing after a restore, it would strike that either the backup or restore process was not allowed to complete. You could purge your events and userEvents tables if they're a source of some of the size or slowdown using the 'Purge all events' button in the screenshot of purge settings you posted.

                1 Reply Last reply Reply Quote 0
                • E
                  etantonio
                  last edited by

                  I don't know where is the problem, really often I purge all events, expecially before a backup. In any case I still turn back to original database becoming each day bigger.

                  1 Reply Last reply Reply Quote 0
                  • phildunlapP
                    phildunlap
                    last edited by

                    You could try converting this instance over to MySQL. There was an issue with H2 databases growing that didn't get a true resolution until the 3.4 series with the persistent publisher, for instance. MySQL does not have the same issue with binary data sections not getting reused or freed when updated.

                    1 Reply Last reply Reply Quote 0
                    • E
                      etantonio
                      last edited by

                      I'm trying to convert it to mysql,
                      so I've installed MySQL 8, created a schema named "mango"

                      then in my env.properties I've now:

                      db.type=mysql
                      db.url=jdbc:mysql://localhost/mango
                      db.username=solergy
                      db.password=secret
                      db.mysqldump=
                      db.mysql=

                      convert.db.type=h2
                      convert.db.url=jdbc:h2:${ma.home}/databases/mah2
                      convert.db.username=
                      convert.db.password=

                      but the result is that:

                      INFO 2018-10-03 18:22:00,037 (com.serotonin.m2m2.db.BasePooledProxy.initializeI
                      mpl:36) - Initializing pooled connection manager
                      FATAL 2018-10-03 18:22:00,792 (com.serotonin.m2m2.db.DatabaseProxy.initialize:19
                      0) - Unable to connect to database of type MYSQL
                      org.springframework.jdbc.CannotGetJdbcConnectionException: Could not get JDBC Co
                      nnection; nested exception is org.apache.commons.dbcp.SQLNestedException: Cannot
                      create PoolableConnectionFactory (Could not create connection to database serve
                      r.)
                      at org.springframework.jdbc.datasource.DataSourceUtils.getConnection(Dat
                      aSourceUtils.java:80)
                      at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:
                      615)

                      Thanks for your help
                      Antonio

                      1 Reply Last reply Reply Quote 0
                      • phildunlapP
                        phildunlap
                        last edited by phildunlap

                        I would it'd be the db.url that would be going wrong. Two things could be at issue,

                        1. It's not interpreting the absence of port as the default port, resolve this by explicitly adding a :3306 like jdbc:mysql://localhost:3306/mango
                        2. localhost is not resolving to an address that comports with the bind address in your MySQL configuration (like ::1 if it's not enabling IPv6). Resolve this by adjusting the bind address in the MySQL configuration, or by trying the explicit local address instead of the hostname, like jdbc:mysql://127.0.0.1:3306/mango

                        But a lot of error output is missing in your post, such as the 'caused by' section in the stack track. It could be that you do not have the users credentials or privileges correct. Consult this thread for instructions on creating the MySQL database, a user, and granting privileges on that database to that user: https://forum.infiniteautomation.com/topic/3559/convert-from-h2-to-mysql-database-guidelines

                        1 Reply Last reply Reply Quote 0
                        • E
                          etantonio
                          last edited by phildunlap

                          according to your suggestion now the env.properties is the following:

                          db.type=mysql
                          db.url=jdbc:mysql://127.0.0.1:3306/mango
                          db.username=solergy
                          db.password=secret
                          db.mysqldump=
                          db.mysql=

                          convert.db.type=h2
                          convert.db.url=jdbc:h2:${ma.home}/databases/mah2
                          convert.db.username=
                          convert.db.password=

                          the mango database for user solergy is created, granted and up and running:

                          0_1538642627946_MangoDatabase.JPG

                          0_1538643566987_MySQL Running.JPG

                          but still mango doesn't start:

                          INFO  2018-10-04 10:27:16,771 (com.serotonin.m2m2.db.BasePooledProxy.initializeI
mpl:36) - Initializing pooled connection manager
FATAL 2018-10-04 10:27:18,016 (com.serotonin.m2m2.db.DatabaseProxy.initialize:19
0) - Unable to connect to database of type MYSQL
org.springframework.jdbc.CannotGetJdbcConnectionException: Could not get JDBC Co
nnection; nested exception is org.apache.commons.dbcp.SQLNestedException: Cannot
 create PoolableConnectionFactory (Could not create connection to database serve
r.)
        at org.springframework.jdbc.datasource.DataSourceUtils.getConnection(Dat
aSourceUtils.java:80)
        at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:
615)
        at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:68
0)
        at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:71
2)
        at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:72
2)
        at com.serotonin.db.spring.ExtendedJdbcTemplate.queryForObject(ExtendedJ
dbcTemplate.java:39)
        at com.serotonin.db.spring.ExtendedJdbcTemplate.queryForObject(ExtendedJ
dbcTemplate.java:63)
        at com.serotonin.db.DaoUtils.queryForObject(DaoUtils.java:336)
        at com.serotonin.m2m2.db.dao.SystemSettingsDao.getValue(SystemSettingsDa
o.java:158)
        at com.serotonin.m2m2.db.dao.SystemSettingsDao.getIntValue(SystemSetting
sDao.java:178)
        at com.serotonin.m2m2.db.upgrade.DBUpgrade.checkUpgrade(DBUpgrade.java:5
1)
        at com.serotonin.m2m2.db.upgrade.DBUpgrade.checkUpgrade(DBUpgrade.java:3
4)
        at com.serotonin.m2m2.db.DatabaseProxy.initialize(DatabaseProxy.java:180
)
        at com.serotonin.m2m2.Lifecycle.databaseInitialize(Lifecycle.java:609)
        at com.serotonin.m2m2.Lifecycle.initialize(Lifecycle.java:287)
        at com.serotonin.m2m2.Main.main(Main.java:115)
Caused by: org.apache.commons.dbcp.SQLNestedException: Cannot create PoolableCon
nectionFactory (Could not create connection to database server.)
        at org.apache.commons.dbcp.BasicDataSource.createPoolableConnectionFacto
ry(BasicDataSource.java:1549)
        at org.apache.commons.dbcp.BasicDataSource.createDataSource(BasicDataSou
rce.java:1388)
        at org.apache.commons.dbcp.BasicDataSource.getConnection(BasicDataSource
.java:1044)
        at org.springframework.jdbc.datasource.DataSourceUtils.doGetConnection(D
ataSourceUtils.java:111)
        at org.springframework.jdbc.datasource.DataSourceUtils.getConnection(Dat
aSourceUtils.java:77)
        ... 15 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLNonTransientConnectionException:
 Could not create connection to database server.
        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)

        at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)

        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Sou
rce)
        at java.lang.reflect.Constructor.newInstance(Unknown Source)
        at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
        at com.mysql.jdbc.Util.getInstance(Util.java:386)
        at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1015)
        at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:989)
        at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:975)
        at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:920)
        at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2
568)
        at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2304)
        at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:834)
        at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:47)
        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)

        at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)

        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Sou
rce)
        at java.lang.reflect.Constructor.newInstance(Unknown Source)
        at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
        at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:416)
        at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java
:346)
        at org.apache.commons.dbcp.DriverConnectionFactory.createConnection(Driv
erConnectionFactory.java:38)
        at org.apache.commons.dbcp.PoolableConnectionFactory.makeObject(Poolable
ConnectionFactory.java:582)
        at org.apache.commons.dbcp.BasicDataSource.validateConnectionFactory(Bas
icDataSource.java:1556)
        at org.apache.commons.dbcp.BasicDataSource.createPoolableConnectionFacto
ry(BasicDataSource.java:1545)
        ... 19 more
Caused by: java.lang.NullPointerException
        at com.mysql.jdbc.ConnectionImpl.getServerCharacterEncoding(ConnectionIm
pl.java:3279)
        at com.mysql.jdbc.MysqlIO.sendConnectionAttributes(MysqlIO.java:1940)
        at com.mysql.jdbc.MysqlIO.proceedHandshakeWithPluggableAuthentication(My
sqlIO.java:1866)
        at com.mysql.jdbc.MysqlIO.doHandshake(MysqlIO.java:1252)
        at com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2486)
        at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2
519)
        ... 33 more
ERROR 2018-10-04 10:27:18,400 (com.serotonin.m2m2.Main.main:119) - Error during
initialization
org.springframework.jdbc.CannotGetJdbcConnectionException: Could not get JDBC Co
nnection; nested exception is org.apache.commons.dbcp.SQLNestedException: Cannot
 create PoolableConnectionFactory (Could not create connection to database serve
r.)
        at org.springframework.jdbc.datasource.DataSourceUtils.getConnection(Dat
aSourceUtils.java:80)
        at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:
615)
        at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:68
0)
        at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:71
2)
        at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:72
2)
        at com.serotonin.db.spring.ExtendedJdbcTemplate.queryForObject(ExtendedJ
dbcTemplate.java:39)
        at com.serotonin.db.spring.ExtendedJdbcTemplate.queryForObject(ExtendedJ
dbcTemplate.java:63)
        at com.serotonin.db.DaoUtils.queryForObject(DaoUtils.java:336)
        at com.serotonin.m2m2.db.dao.SystemSettingsDao.getValue(SystemSettingsDa
o.java:158)
        at com.serotonin.m2m2.db.dao.SystemSettingsDao.getIntValue(SystemSetting
sDao.java:178)
        at com.serotonin.m2m2.db.upgrade.DBUpgrade.checkUpgrade(DBUpgrade.java:5
1)
        at com.serotonin.m2m2.db.upgrade.DBUpgrade.checkUpgrade(DBUpgrade.java:3
4)
        at com.serotonin.m2m2.db.DatabaseProxy.initialize(DatabaseProxy.java:180
)
        at com.serotonin.m2m2.Lifecycle.databaseInitialize(Lifecycle.java:609)
        at com.serotonin.m2m2.Lifecycle.initialize(Lifecycle.java:287)
        at com.serotonin.m2m2.Main.main(Main.java:115)
Caused by: org.apache.commons.dbcp.SQLNestedException: Cannot create PoolableCon
nectionFactory (Could not create connection to database server.)
        at org.apache.commons.dbcp.BasicDataSource.createPoolableConnectionFacto
ry(BasicDataSource.java:1549)
        at org.apache.commons.dbcp.BasicDataSource.createDataSource(BasicDataSou
rce.java:1388)
        at org.apache.commons.dbcp.BasicDataSource.getConnection(BasicDataSource
.java:1044)
        at org.springframework.jdbc.datasource.DataSourceUtils.doGetConnection(D
ataSourceUtils.java:111)
        at org.springframework.jdbc.datasource.DataSourceUtils.getConnection(Dat
aSourceUtils.java:77)
        ... 15 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLNonTransientConnectionException:
 Could not create connection to database server.
        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)

        at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)

        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Sou
rce)
        at java.lang.reflect.Constructor.newInstance(Unknown Source)
        at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
        at com.mysql.jdbc.Util.getInstance(Util.java:386)
        at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1015)
        at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:989)
        at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:975)
        at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:920)
        at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2
568)
        at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2304)
        at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:834)
        at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:47)
        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)

        at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)

        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Sou
rce)
        at java.lang.reflect.Constructor.newInstance(Unknown Source)
        at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
        at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:416)
        at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java
:346)
        at org.apache.commons.dbcp.DriverConnectionFactory.createConnection(Driv
erConnectionFactory.java:38)
        at org.apache.commons.dbcp.PoolableConnectionFactory.makeObject(Poolable
ConnectionFactory.java:582)
        at org.apache.commons.dbcp.BasicDataSource.validateConnectionFactory(Bas
icDataSource.java:1556)
        at org.apache.commons.dbcp.BasicDataSource.createPoolableConnectionFacto
ry(BasicDataSource.java:1545)
        ... 19 more
Caused by: java.lang.NullPointerException
        at com.mysql.jdbc.ConnectionImpl.getServerCharacterEncoding(ConnectionIm
pl.java:3279)
        at com.mysql.jdbc.MysqlIO.sendConnectionAttributes(MysqlIO.java:1940)
        at com.mysql.jdbc.MysqlIO.proceedHandshakeWithPluggableAuthentication(My
sqlIO.java:1866)
        at com.mysql.jdbc.MysqlIO.doHandshake(MysqlIO.java:1252)
        at com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2486)
        at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2
519)
        ... 33 more
INFO  2018-10-04 10:27:18,448 (com.serotonin.m2m2.Lifecycle.terminate:353) - Man
go Lifecycle terminating...
Exception in thread "high-pool-1-thread-1" java.lang.NullPointerException
        at com.serotonin.m2m2.CoreLicenseDefinition$2.run(CoreLicenseDefinition.
java:149)
        at com.serotonin.timer.sync.Synchronizer$TaskWrapper.run(Synchronizer.ja
va:155)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
        at java.lang.Thread.run(Unknown Source)
INFO  2018-10-04 10:27:18,625 (com.serotonin.m2m2.db.BasePooledProxy.terminateIm
pl:110) - Stopping database
INFO  2018-10-04 10:27:18,634 (com.serotonin.m2m2.Lifecycle.terminate:453) - Man
go Lifecycle terminated.
                          1 Reply Last reply Reply Quote 0
                          • phildunlapP
                            phildunlap
                            last edited by phildunlap

                            Did you perchance change the db.stream property to true ?

                            I don't believe we've done much testing against MySQL 8 (thanks for posting the version information!), so it's possible there are issues related to that. You could try and older version and see if that works out of the box. I know 5.5 has been used a great deal.

                            1 Reply Last reply Reply Quote 0
                            • E
                              etantonio
                              last edited by

                              Hy,
                              db.stream is unchanged, this is remaining properties for db on env.properties:

                              db.forceUseIndex=true
                              db.fetchSize=-1
                              db.stream=false

                              maybe I've to choose a certain character encoding in mysql?

                              Caused by: java.lang.NullPointerException
                              at com.mysql.jdbc.ConnectionImpl.getServerCharacterEncoding(ConnectionIm
                              pl.java:3279)

                              1 Reply Last reply Reply Quote 0
                              • phildunlapP
                                phildunlap
                                last edited by

                                No, I wouldn't think so. It's never come up in the past, but I think few people were using the MySQL server version released last April and they may be new issues. I did search the error a little and find something in the code that may have something to do with it, but I do intend to look into this more and try to run on MySQL 8.

                                1 Reply Last reply Reply Quote 0
                                • phildunlapP
                                  phildunlap
                                  last edited by

                                  I installed MySQL server 8 on my Windows machine and found I could convert an H2 database without issue. I also tried telling Java that it was in Italy (in case locale was affecting the getServerCharacterEncoding method) but it still converted without issue.

                                  maybe I've to choose a certain character encoding in mysql?

                                  This is done for you in the MySQLProxy class, it modifies the db.url for UTF-8:
                                  https://github.com/infiniteautomation/ma-core-public/blob/main/Core/src/com/serotonin/m2m2/db/MySQLProxy.java#L28

                                  A suggestion I saw is to try the latest JDBC. This is a 2.8 system? I would guess you have a very outdated Mango/lib/mysql-connector-java-x.y.z.jar file. You could try the version bundled with the latest Mango 3, or you could download the latest MySQL jdbc jar and replace the outdated with the new. You can download the latest here: https://dev.mysql.com/downloads/connector/j/5.1.html

                                  1 Reply Last reply Reply Quote 0
                                  • E
                                    etantonio
                                    last edited by etantonio

                                    Ok,
                                    after driver change, installation is started but after a long while during migration I had this error,
                                    can I do something to avoid it and continue migration?

                                    Using Java at java
INFO  2018-10-05 08:57:59,936 (com.serotonin.m2m2.Main.main:82) - Starting Mango
 2.8.4 with Schema Version: 13
INFO  2018-10-05 08:58:01,596 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'asciiFile', v1.3.0 by Infinite Automation
INFO  2018-10-05 08:58:01,656 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'BACnet', v2.3.0 by Infinite Automation Software
INFO  2018-10-05 08:58:01,666 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'controlcore', v1.2.0 by Infinite Automation
INFO  2018-10-05 08:58:01,676 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'dashboards', v3.3.0 by Infinite Automation Systems Inc.
INFO  2018-10-05 08:58:01,826 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'dataFile', v1.2.0 by Infinite Automation
INFO  2018-10-05 08:58:01,846 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'dataImport', v1.5.0 by Infinite Automation Software
INFO  2018-10-05 08:58:01,856 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'dataPointDetailsView', v1.1.0 by Infinite Automation
INFO  2018-10-05 08:58:01,866 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'dnp3', v1.7.0 by Infinite Automation Software
INFO  2018-10-05 08:58:01,876 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'egauge', v1.2.0 by Infinite Automation
INFO  2018-10-05 08:58:01,886 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'excelReports', v1.1.1 by Infinite Automation Software
INFO  2018-10-05 08:58:02,006 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'graphicalViews', v1.7.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,316 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'http', v1.6.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,366 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'internal', v1.6.1 by Infinite Automation Software
INFO  2018-10-05 08:58:02,386 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'log4jDS', v1.2.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,396 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'log4JReset', v1.2.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,406 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'loggingConsole', v1.2.0 by Infinite Automation
INFO  2018-10-05 08:58:02,426 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'maintenanceEvents', v1.6.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,436 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'mangoApi', v1.2.0 by Infinite Automation
INFO  2018-10-05 08:58:02,446 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'mbus', v1.2.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,456 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'meta', v2.3.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,476 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'modbus', v1.7.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,536 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'onewire', v1.6.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,606 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'opcda', v1.7.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,616 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'pakbus', v1.1.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,676 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'persistent', v1.7.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,706 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'pointLinks', v1.6.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,726 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'pop3', v1.6.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,736 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'reports', v2.3.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,796 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'scheduledEvents', v1.6.0 by Infinite Automation
INFO  2018-10-05 08:58:02,886 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'scripting', v1.2.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,906 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'serial', v1.3.0 by Infinite Automation
INFO  2018-10-05 08:58:02,926 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'snmp', v1.6.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,966 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'sqlConsole', v1.6.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,976 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'sqlds', v1.7.0 by Infinite Automation Software
INFO  2018-10-05 08:58:02,996 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'ssh', v1.2.0 by Infinite Automation
INFO  2018-10-05 08:58:03,006 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'sstGlobalScripts', v1.6.0 by Infinite Automation Software
INFO  2018-10-05 08:58:03,016 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'sstGraphics', v1.2.0 by Infinite Automation Software
INFO  2018-10-05 08:58:03,056 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'sstTheme', v1.2.0 by Infinite Automation Software
INFO  2018-10-05 08:58:03,066 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'TCPIP', v1.2.0 by Infinite Automation
INFO  2018-10-05 08:58:03,076 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'templateConfig', v1.1.0 by Infinite Automation Software
INFO  2018-10-05 08:58:03,106 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'twilio', v1.2.0 by Infinite Automation
INFO  2018-10-05 08:58:03,116 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'virtualDS', v1.6.0 by Infinite Automation Software
INFO  2018-10-05 08:58:03,126 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'vmstat', v1.6.0 by Infinite Automation Software
INFO  2018-10-05 08:58:03,136 (com.serotonin.m2m2.Main.loadModules:416) - Loadin
g module 'watchlists', v1.8.0 by Infinite Automation Software
WARN  2018-10-05 08:58:05,118 (com.serotonin.m2m2.Main.loadModules:623) - Unused
 classes entry: com.infiniteautomation.mango.pakbus.dwr.PakBusEditDwr
INFO  2018-10-05 08:58:05,368 (com.serotonin.m2m2.Lifecycle.initialize:216) - In
itializing Spring Object Mapper
INFO  2018-10-05 08:58:08,428 (com.serotonin.m2m2.Lifecycle.loadLic:471) - Check
ing license...
INFO  2018-10-05 08:58:09,298 (com.serotonin.m2m2.db.BasePooledProxy.initializeI
mpl:36) - Initializing pooled connection manager
Fri Oct 05 08:58:10 CEST 2018 WARN: Establishing SSL connection without server's
 identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ a
nd 5.7.6+ requirements SSL connection must be established by default if explicit
 option isn't set. For compliance with existing applications not using SSL the v
erifyServerCertificate property is set to 'false'. You need either to explicitly
 disable SSL by setting useSSL=false, or set useSSL=true and provide truststore
for server certificate verification.
Fri Oct 05 08:58:11 CEST 2018 WARN: Establishing SSL connection without server's
 identity verification is not recommended. According to MySQL 5.5.45+, 5.6.26+ a
nd 5.7.6+ requirements SSL connection must be established by default if explicit
 option isn't set. For compliance with existing applications not using SSL the v
erifyServerCertificate property is set to 'false'. You need either to explicitly
 disable SSL by setting useSSL=false, or set useSSL=true and provide truststore
for server certificate verification.
INFO  2018-10-05 09:02:03,183 (com.serotonin.m2m2.db.H2Proxy.initializeImpl:42)
- Initializing H2 connection manager
WARN  2018-10-05 09:02:03,718 (com.serotonin.m2m2.db.DBConvert.execute:41) - Run
ning database conversion from H2 to MYSQL
WARN  2018-10-05 09:02:08,243 (com.serotonin.m2m2.db.DBConvert.copyTable:87) -
--> Converting table systemSettings...
WARN  2018-10-05 09:02:08,843 (com.serotonin.m2m2.db.DBConvert.copyTable:136) -
 --> Finished converting table systemSettings. 78 records copied.
WARN  2018-10-05 09:02:08,844 (com.serotonin.m2m2.db.DBConvert.copyTable:87) -
--> Converting table users...
WARN  2018-10-05 09:02:09,074 (com.serotonin.m2m2.db.DBConvert.copyTable:136) -
 --> Finished converting table users. 5 records copied.
WARN  2018-10-05 09:02:09,080 (com.serotonin.m2m2.db.DBConvert.copyTable:87) -
--> Converting table userComments...
WARN  2018-10-05 09:02:09,089 (com.serotonin.m2m2.db.DBConvert.copyTable:136) -
 --> Finished converting table userComments. 0 records copied.
WARN  2018-10-05 09:02:09,095 (com.serotonin.m2m2.db.DBConvert.copyTable:87) -
--> Converting table mailingLists...
WARN  2018-10-05 09:02:09,427 (com.serotonin.m2m2.db.DBConvert.copyTable:136) -
 --> Finished converting table mailingLists. 1 records copied.
WARN  2018-10-05 09:02:09,434 (com.serotonin.m2m2.db.DBConvert.copyTable:87) -
--> Converting table mailingListInactive...
WARN  2018-10-05 09:02:09,442 (com.serotonin.m2m2.db.DBConvert.copyTable:136) -
 --> Finished converting table mailingListInactive. 0 records copied.
WARN  2018-10-05 09:02:09,445 (com.serotonin.m2m2.db.DBConvert.copyTable:87) -
--> Converting table mailingListMembers...
WARN  2018-10-05 09:02:09,770 (com.serotonin.m2m2.db.DBConvert.copyTable:136) -
 --> Finished converting table mailingListMembers. 1 records copied.
WARN  2018-10-05 09:02:09,776 (com.serotonin.m2m2.db.DBConvert.copyTable:87) -
--> Converting table templates...
WARN  2018-10-05 09:02:10,642 (com.serotonin.m2m2.db.DBConvert.copyTable:136) -
 --> Finished converting table templates. 4 records copied.
WARN  2018-10-05 09:02:10,648 (com.serotonin.m2m2.db.DBConvert.copyTable:87) -
--> Converting table dataSources...
WARN  2018-10-05 09:02:11,113 (com.serotonin.m2m2.db.DBConvert.copyTable:136) -
 --> Finished converting table dataSources. 12 records copied.
WARN  2018-10-05 09:02:11,117 (com.serotonin.m2m2.db.DBConvert.copyTable:87) -
--> Converting table dataPoints...
WARN  2018-10-05 09:02:38,963 (com.serotonin.m2m2.db.DBConvert.copyTable:136) -
 --> Finished converting table dataPoints. 201 records copied.
WARN  2018-10-05 09:02:38,972 (com.serotonin.m2m2.db.DBConvert.copyTable:87) -
--> Converting table pointValues...
ERROR 2018-10-05 10:07:39,219 (com.serotonin.m2m2.Main.main:119) - Error during
initialization
com.serotonin.ShouldNeverHappenException: java.sql.SQLException: 'NaN' is not a
valid numeric or approximate numeric value
        at com.serotonin.m2m2.db.DatabaseProxy.initialize(DatabaseProxy.java:134
)
        at com.serotonin.m2m2.Lifecycle.databaseInitialize(Lifecycle.java:609)
        at com.serotonin.m2m2.Lifecycle.initialize(Lifecycle.java:287)
        at com.serotonin.m2m2.Main.main(Main.java:115)
Caused by: java.sql.SQLException: 'NaN' is not a valid numeric or approximate nu
meric value
        at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:965)
        at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:898)
        at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:887)
        at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:861)
        at com.mysql.jdbc.PreparedStatement.setDouble(PreparedStatement.java:330
0)
        at com.mysql.jdbc.PreparedStatement.setNumericObject(PreparedStatement.j
ava:3531)
        at com.mysql.jdbc.PreparedStatement.setObject(PreparedStatement.java:369
5)
        at com.mysql.jdbc.JDBC42PreparedStatement.setObject(JDBC42PreparedStatem
ent.java:99)
        at com.mysql.jdbc.PreparedStatement.setObject(PreparedStatement.java:362
0)
        at com.mysql.jdbc.JDBC42PreparedStatement.setObject(JDBC42PreparedStatem
ent.java:83)
        at org.apache.commons.dbcp.DelegatingPreparedStatement.setObject(Delegat
ingPreparedStatement.java:166)
        at org.apache.commons.dbcp.DelegatingPreparedStatement.setObject(Delegat
ingPreparedStatement.java:166)
        at com.serotonin.m2m2.db.DBConvert.copyTable(DBConvert.java:119)
        at com.serotonin.m2m2.db.DBConvert.execute(DBConvert.java:54)
        at com.serotonin.m2m2.db.DatabaseProxy.initialize(DatabaseProxy.java:131
)
        ... 3 more
INFO  2018-10-05 10:07:39,224 (com.serotonin.m2m2.Lifecycle.terminate:353) - Man
go Lifecycle terminating...
Exception in thread "high-pool-1-thread-1" java.lang.NullPointerException
        at com.serotonin.m2m2.CoreLicenseDefinition$2.run(CoreLicenseDefinition.
java:149)
        at com.serotonin.timer.sync.Synchronizer$TaskWrapper.run(Synchronizer.ja
va:155)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
        at java.lang.Thread.run(Unknown Source)
INFO  2018-10-05 10:07:39,279 (com.serotonin.m2m2.db.BasePooledProxy.terminateIm
pl:110) - Stopping database
INFO  2018-10-05 10:07:39,281 (com.serotonin.m2m2.Lifecycle.terminate:453) - Man
go Lifecycle terminated.

                                    I think the problem could be that pointvalue is nullable

                                    0_1538733423521_PointValues.JPG

                                    you suggest me to clean values with an sql like
                                    "delete from pointvalues where pointvalue is null;"
                                    ?

                                    1 Reply Last reply Reply Quote 0
                                    • phildunlapP
                                      phildunlap
                                      last edited by phildunlap

                                      That looks like it would be caused by MySQL not supporting NaN, Infinity, or -Infinity as valid values in a column described as a double. If one has Mango already running on MySQL and attempts to set the value of a point to NaN, you get 0, if you do Infinity, you get Double.MAX_VALUE

                                      But for converting, it doesn't look like there's any handling for the differences in what values are acceptable in one database or another. You could fix this by removing or changing these values before doing the conversion, by running this either through the Mango/bin/h2-web-console script or on the /sqlConsole.shtm page of Mango running on the old database:

                                      -- for use to remove values from the H2 pointValues table that cannot be brought into MySQL
delete from pointValues where pointValue=CAST('NaN' AS DOUBLE PRECISION)
delete from pointValues where pointValue=CAST('Infinity' AS DOUBLE PRECISION);
delete from pointValues where pointValue=CAST('-Infinity' AS DOUBLE PRECISION)

                                      Most commercial users use the NoSQL database to avoid problems with larger point values tables (since in Mango 3 all licensed cores can use the NoSQL database, unlike in 2.x where it is a separate license). That's probably why the issue has not been significant in the past. If you want to use SQL to store your point values, you definitely have to keep that table size under control or Mango will begin to slow down.

                                      1 Reply Last reply Reply Quote 0
                                      • E
                                        etantonio
                                        last edited by

                                        The db convertion from H2 to mysql is running (10 hours just to convert table pointValues) but I think there's something strange, at the moment I have only data from last 80 days concerning about 100 variables stored at 1 sample/minute, so I think 80x100x60x24=11,5Million rows in table pointValues, instead the table is around 40Million points, corresponding to an H2 database of 3.5GB corresponding also to a mysql pointValues table using 3.5GB.
                                        To delete data before last 80 days (originally 5 months) I used the datasource purge for each used datasource. The purge from admin settings seems not to work on a big H2 database or in any case it tooks a very long time.

                                        1 Reply Last reply Reply Quote 0
                                        • E
                                          etantonio
                                          last edited by etantonio

                                          I'm searching for the reason why my H2 database is growing so fast,
                                          I think that this "Logging TYpe = All Data" could be an error:

                                          0_1540911037597_4c7aaf62-9c9e-42cb-b899-46a732b463d2-immagine.png

                                          but, looking at the data, it seems that it takes a new value each minute

                                          0_1540911699158_fd273f3b-9581-4fd4-9d7d-c6dc71f626ca-immagine.png

                                          according to Data Source logging

                                          0_1540911832921_2c348e4c-937b-4992-a809-89c0df8ef98b-immagine.png

                                          so, it seems, it is not a problem, is it right?

                                          1 Reply Last reply Reply Quote 0
                                          • phildunlapP
                                            phildunlap
                                            last edited by phildunlap

                                            If you are not using the NoSQL database, yes pointvalues are a contributing factor to the database expansion (and in some people's cases probably the only factor). But, the issue is here: https://github.com/infiniteautomation/ma-core-public/issues/1344

                                            The likelihood is that sometime (probably sooner than later, maybe 3.6?) we will have a DB upgrade that does the necessary side work to upgrade an PageStore H2 database created in 196 to 197, as referenced in the issues referenced in that issue. In version 197 of H2 the problem of saving a LOB not reusing space has been resolved.

                                            But, if something like your pointValues pointValueAnnotations or events tables are just very full, the next version of the database may not help in your case.

                                            1 Reply Last reply Reply Quote 0
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